5X3Z

Solution structure of musashi1 RBD2 in complex with RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
22D 1H-13C HSQC300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
33D 1H-15N NOESY300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
43D 1H-13C NOESY300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
53D 1H-13C NOESY300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker AvanceIII 950
63D HNCO300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
73D CBCA(CO)NH300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
83D HNCACB300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
93D HNCA300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
103D HBHA(CO)NH300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
113D HCCH-TOCSY300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
123D HCCH-COSY300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3')95% H2O/5% D2O100 mM6.0ambient atm298Bruker DRX 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerAvanceIII950
NMR Refinement
MethodDetailsSoftware
simulated annealingAMBER
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAMBERCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4chemical shift assignmentMagROKobayashi
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax