5WWE

Crystal structure of hnRNPA2B1 in complex with RNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52930.1M Sodium citrate/Citric acid pH 5.5, 20% PEG 3000
Crystal Properties
Matthews coefficientSolvent content
2.1242.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.591α = 90
b = 62.591β = 90
c = 53.043γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDDECTRIS PILATUS3 S 6M2016-10-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.97776SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4301002.33313.48124
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.44

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5EN12.430771938599.770.22690.224360.27434RANDOM68.279
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.01-1.012.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.555
r_dihedral_angle_4_deg22.546
r_dihedral_angle_3_deg19.498
r_long_range_B_refined10.377
r_long_range_B_other10.376
r_scangle_other7.542
r_mcangle_it7.487
r_mcangle_other7.483
r_dihedral_angle_1_deg7.481
r_scbond_it5.082
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.555
r_dihedral_angle_4_deg22.546
r_dihedral_angle_3_deg19.498
r_long_range_B_refined10.377
r_long_range_B_other10.376
r_scangle_other7.542
r_mcangle_it7.487
r_mcangle_other7.483
r_dihedral_angle_1_deg7.481
r_scbond_it5.082
r_mcbond_other5.056
r_mcbond_it5.054
r_scbond_other5.037
r_angle_refined_deg1.581
r_angle_other_deg1.067
r_chiral_restr0.097
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1408
Nucleic Acid Atoms199
Solvent Atoms6
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
HKL-3000data scaling
PHASERphasing