5UZL
Brassica napus DGAT1 exosite
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1 mM NA BnaDGAT1 exosite, 25 mM NA sodium chloride, 30 mM NA sodium phosphate, 0.01 % NA DSS | 90% H2O/10% D2O | 55 mM | 6.3 | 1 atm | 300 | Varian VNMRS 700 |
2 | 2D TOCSY | 1 mM NA BnaDGAT1 exosite, 25 mM NA sodium chloride, 30 mM NA sodium phosphate, 0.01 % NA DSS | 90% H2O/10% D2O | 55 mM | 6.3 | 1 atm | 300 | Varian VNMRS 700 |
3 | 2D DQF-COSY | 1 mM NA BnaDGAT1 exosite, 25 mM NA sodium chloride, 30 mM NA sodium phosphate, 0.01 % NA DSS | 90% H2O/10% D2O | 55 mM | 6.3 | 1 atm | 300 | Varian VNMRS 700 |
4 | 2D 1H-15N HSQC | 1 mM NA BnaDGAT1 exosite, 25 mM NA sodium chloride, 30 mM NA sodium phosphate, 0.01 % NA DSS | 90% H2O/10% D2O | 55 mM | 6.3 | 1 atm | 300 | Varian VNMRS 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | VNMRS | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |