X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529824 - 28% PEG1000, 100 mM TrisHCl, 5 mM CaCl2,
Crystal Properties
Matthews coefficientSolvent content
2.2845.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.856α = 90
b = 57.058β = 108.22
c = 112.785γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDNonius Kappa CCD2013-12-13MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.20.9794ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15096.10.1270.12712.56.453972130.46
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.292.3779.90.8510.6131.14.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.34953972297195.210.199920.197670.24197RANDOM68.234
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.530.99-0.751.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.056
r_dihedral_angle_4_deg21.498
r_dihedral_angle_3_deg17.27
r_dihedral_angle_1_deg6.775
r_long_range_B_refined6.375
r_long_range_B_other6.375
r_scangle_other3.941
r_mcangle_it3.047
r_mcangle_other3.047
r_scbond_it2.517
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.056
r_dihedral_angle_4_deg21.498
r_dihedral_angle_3_deg17.27
r_dihedral_angle_1_deg6.775
r_long_range_B_refined6.375
r_long_range_B_other6.375
r_scangle_other3.941
r_mcangle_it3.047
r_mcangle_other3.047
r_scbond_it2.517
r_scbond_other2.517
r_mcbond_it1.94
r_mcbond_other1.932
r_angle_refined_deg1.928
r_angle_other_deg1.691
r_chiral_restr0.112
r_bond_refined_d0.017
r_gen_planes_refined0.014
r_bond_other_d0.01
r_gen_planes_other0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7541
Nucleic Acid Atoms2149
Solvent Atoms212
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing