5NR6

NMR structure and 1H, 13C and 15N signal assignments for Dictyostelium discoidans MATB protein S71A mutant


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC600 uM [U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker Avance 800
22D 1H-13C HSQC600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker Avance 800
32D 1H-13C HSQC aliphatic600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker Avance 800
43D HNCACB600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
53D CBCA(CO)NH600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
63D HNHAHB600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
73D HBHA(CO)NH600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
83D [1H-13C-1H] HCCH-TOCSY600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
93D [13C-13C-1H] HCCH-TOCSY600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
103D [1H-13C-1H] HCCH-COSY600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
113D 1H-15N NOESY (mix. time 150ms)600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
123D 1H-13C NOESY aliphatic (mix. time 150ms)600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
133D 1H-13C NOESY aromatic (mix. time 150ms)600 uM [U-13C; U-15N] MATB, 25 mM sodium phosphate, 100 mM sodium chloride, 50 uM EDTA95% H2O/5% D2O100mM NaCl, 25mM Na3PO46.01 atm274Bruker DMX 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance800
2BrukerDMX600
NMR Refinement
MethodDetailsSoftware
simulated annealingUNIO
simulated annealingXplor-NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number30
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpin3.1 and 3.2Bruker Biospin
2chemical shift assignmentCcpNmr Analysis2.4CCPN
3structure calculationUNIO2.0.3Herrmann
4structure calculationXplor-NIH2.28Schwieters, Kuszewski, Tjandra and Clore
5refinementAmber11Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman