X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1 M Sodium Cacodylate, pH 6.5, 20% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.5551.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.47α = 90
b = 50.62β = 90.16
c = 114.31γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2011-05-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9778DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0743.8198.60.0512.13.56050740.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.072.1399.60.7232.33.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2BNU2.0743.8157421305198.480.190390.188570.22319RANDOM56.984
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.58-1.412.81-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.445
r_dihedral_angle_4_deg19.492
r_dihedral_angle_3_deg16.929
r_dihedral_angle_1_deg7.267
r_long_range_B_refined7.053
r_long_range_B_other7.016
r_scangle_other4.28
r_mcangle_it3.621
r_mcangle_other3.621
r_scbond_it2.912
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.445
r_dihedral_angle_4_deg19.492
r_dihedral_angle_3_deg16.929
r_dihedral_angle_1_deg7.267
r_long_range_B_refined7.053
r_long_range_B_other7.016
r_scangle_other4.28
r_mcangle_it3.621
r_mcangle_other3.621
r_scbond_it2.912
r_scbond_other2.783
r_mcbond_it2.25
r_mcbond_other2.249
r_angle_refined_deg1.97
r_angle_other_deg1.125
r_chiral_restr0.143
r_bond_refined_d0.019
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6998
Nucleic Acid Atoms
Solvent Atoms207
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
XDSdata reduction
Aimlessdata scaling
PHASERphasing