5MMU

NMR solution structure of the major apple allergen Mal d 1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8 mM [U-99% 15N] Mal d 1, 10 mM sodium phosphate, 11.2 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
22D 1H-15C HSQC0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
33D HNCO0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
43D HNCACB0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
53D CBCA(CO)NH0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
83D HCCH-TOCSY0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Bruker Avance II+ 600
73D (H)CC(CO)NH-TOCSY0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Bruker Avance II+ 600
63D 1H-15N TOCSY0.8 mM [U-99% 15N] Mal d 1, 10 mM sodium phosphate, 11.2 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Bruker Avance II+ 600
103D 1H-13N NOESY0.8 mM [U-99% 15N] Mal d 1, 10 mM sodium phosphate, 11.2 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
93D 1H-13C NOESY0.5 mM [U-13C; U-15N] Mal d 1, 10 mM sodium phosphate, 7 mM L-ascorbic acid91% H2O/9% D2O6.9960 mbar298Agilent Direct Drive 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentDirect Drive500
2BrukerAvance II+600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationXplor-NIH2.42Schwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentCcpNmr AnalysisCCPN
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax