5M9F

Structure of the two C-terminal domains of bacteriophage K gp144


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5293100 mM HEPES pH 7.5, 12% w/v PEG 4000, 100 mM sodium acetate

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.69α = 90
b = 81.311β = 90
c = 154.239γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.97927ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.829.3399.90.1030.9958.65.85997420.281
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8499.80.7370.7182.16

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.829.3356864300899.780.163520.161260.2062RANDOM27.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.250.65-0.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.852
r_dihedral_angle_4_deg15.378
r_dihedral_angle_3_deg11.222
r_dihedral_angle_1_deg7.147
r_long_range_B_refined6.167
r_long_range_B_other5.987
r_scangle_other4.141
r_mcangle_other3.097
r_mcangle_it3.096
r_scbond_it2.741
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.852
r_dihedral_angle_4_deg15.378
r_dihedral_angle_3_deg11.222
r_dihedral_angle_1_deg7.147
r_long_range_B_refined6.167
r_long_range_B_other5.987
r_scangle_other4.141
r_mcangle_other3.097
r_mcangle_it3.096
r_scbond_it2.741
r_scbond_other2.741
r_mcbond_it2.282
r_mcbond_other2.225
r_angle_refined_deg1.656
r_angle_other_deg0.928
r_chiral_restr0.099
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4852
Nucleic Acid Atoms
Solvent Atoms617
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
autoSHARPphasing