5LG9

Structure of PfIMP2 (Immune Mapped Protein 2 from Plasmodium falciparum) - an antigenic protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
23D CBCA(CO)NH1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
33D HNCACB1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
43D HNCO1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
53D HN(CO)CA1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
63D HBHA(CO)NH1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
73D HCCH-TOCSY1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
83D H(CCO)NH1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 600
93D 1H-15N NOESY1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 800
103D 1H-13C NOESY aliphatic1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 800
113D 1H-13C NOESY aromatic1.5 mM [U-13C; U-15N] PfIMP2, 50 mM HEPES, 150 mM sodium chloride, 1 mM DTT, 0.02 % sodium azide90% H2O/10% D2O150 mM NaCl mM7.51 atm303Bruker AvanceII 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvanceII600
2BrukerAvanceII800
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2structure calculationARIALinge, O'Donoghue and Nilges
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4peak pickingCcpNmr AnalysisCCPN