5IEJ

Solution structure of the BeF3-activated conformation of SdrG from Pseudomonas melonis Fr1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
11D H1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
23D HNCACB1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
33D CBCA(CO)NH1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
43D HNCO1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
53D H(CCO)NH1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
63D C(CO)NH1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE III 500
93D 1H-15N NOESY1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE 900
83D 1H-13C NOESY aliphatic1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE 900
73D 1H-13C NOESY aromatic1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride90% H2O/10% D2O105 mM6.5AMBIENT Pa293Bruker AVANCE 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
2BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.96Bruker Biospin
2data analysisCARA3.96Keller and Wuthrich
3structure calculationCYANAGuntert, Mumenthaler and Wuthrich
4refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman