5AGQ

Solution structure of the TAM domain of human TIP5 BAZ2A involved in epigenetic regulation of rRNA genes


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
115N-HSQC20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
213C-HSQC20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
3HNCACB20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
4HN(CO)CACB20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
5CC(CO)NH- TOCSY20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
6HCCH-TOCSY20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
715N- EDITED 3D NOESY20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
813C- EDITED 3D NOESY (ALIPHATICS)20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
913C-EDITED 3D NOESY (AROMATICS)20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O100 mM7.01.0 atm293.0
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
ARIA2, CNSCNS
NMR Ensemble Information
Conformer Selection CriteriaBEST ENERGY
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (n/a)
Additional NMR Experimental Information
DetailsTHE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED TIP5-TAM DOMAIN. THE SOLUTION STRUCTURE WAS DEFINED BASED ON 2732 DISTANCE RESTRAINTS, DERIVED FROM CYANA 3.0, TORSION ANGLE RESTRAINTS AND TWO SETS OF RDCS FROM TWO DIFFERENT ALIGNMENT MEDIA. VALIDATION PERFORMED WITH ICING WEB, PROCHECK AND WHATCHECK.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE, JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON, WARREN
2structure solutionSparky
3structure solutionCYANA3.0