4Z8Z

Crystal structure of the hypothetical protein from Ruminiclostridium thermocellum ATCC 27405


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2 M Trimethylamine N-oxide, 0.1 M Tris, 20% PEG2000
Crystal Properties
Matthews coefficientSolvent content
2.8857.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 141.353α = 90
b = 141.353β = 90
c = 112.676γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2014-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.553099.90.0651.79.21419214192
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.552.591000.614.29.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.55301349669499.610.177450.175050.22171RANDOM64.527
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.02-1.01-2.026.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.91
r_dihedral_angle_3_deg17.505
r_dihedral_angle_4_deg16.9
r_dihedral_angle_1_deg7.276
r_long_range_B_refined5.327
r_long_range_B_other5.323
r_scangle_other3.922
r_mcangle_it3.25
r_mcangle_other3.249
r_scbond_it2.493
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.91
r_dihedral_angle_3_deg17.505
r_dihedral_angle_4_deg16.9
r_dihedral_angle_1_deg7.276
r_long_range_B_refined5.327
r_long_range_B_other5.323
r_scangle_other3.922
r_mcangle_it3.25
r_mcangle_other3.249
r_scbond_it2.493
r_scbond_other2.493
r_mcbond_it2.065
r_mcbond_other2.064
r_angle_refined_deg1.733
r_angle_other_deg1.016
r_chiral_restr0.098
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2619
Nucleic Acid Atoms
Solvent Atoms27
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
BLU-MAXdata collection
HKL-3000data scaling
PHENIXphasing