4XUU

The hSac2 domain from human phosphoinositide phosphatase Sac2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8300.150.2 M ammonium sulfate, 0.1 M Tris-HCl pH 8.0, and 20% PEG3350. Long rod-shaped crystals formed within 2-3 days.
Crystal Properties
Matthews coefficientSolvent content
2.5651.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.772α = 90
b = 82.852β = 90
c = 157.695γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102011-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.978CHESSA1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.630990.067297.725539
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.641000.6137.62396

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.623024790126198.880.25020.24830.2867RANDOM32.509
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.364.37-4.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.76
r_dihedral_angle_3_deg15.727
r_dihedral_angle_4_deg12.207
r_dihedral_angle_1_deg5.051
r_scangle_it1.284
r_angle_refined_deg0.894
r_mcangle_it0.823
r_scbond_it0.818
r_mcbond_it0.444
r_chiral_restr0.062
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.76
r_dihedral_angle_3_deg15.727
r_dihedral_angle_4_deg12.207
r_dihedral_angle_1_deg5.051
r_scangle_it1.284
r_angle_refined_deg0.894
r_mcangle_it0.823
r_scbond_it0.818
r_mcbond_it0.444
r_chiral_restr0.062
r_bond_refined_d0.006
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5434
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms

Software

Software
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing