4V5V

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.510% (V/V) MPD, 0.05 M AMMONIUM ACETATE, 0.05 M TRIS PH7.5, 0.01 M MGCL2
Crystal Properties
Matthews coefficientSolvent content
3.9969

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 164.347α = 90.09
b = 175.74β = 89.96
c = 241.977γ = 89.92
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.65097.30.126.71.93304861.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.63.7397.70.671.21.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WJ83.6502895101538097.20.2360.2340.269RANDOM146.03
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
19.770.51-0.2-8.90.92-10.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.861
r_dihedral_angle_3_deg21.167
r_dihedral_angle_4_deg14.557
r_dihedral_angle_1_deg5.025
r_angle_refined_deg1.273
r_chiral_restr0.088
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.861
r_dihedral_angle_3_deg21.167
r_dihedral_angle_4_deg14.557
r_dihedral_angle_1_deg5.025
r_angle_refined_deg1.273
r_chiral_restr0.088
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms58400
Nucleic Acid Atoms2800
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
MOLREPmodel building
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing