X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52930.1 M Bis-Tris, pH 5.5, 3.0 M NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
3.6766.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.054α = 90
b = 61.054β = 90
c = 122.179γ = 90
Symmetry
Space GroupP 43 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102011-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-11.0ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.461.051000.081464434644322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.451000.932

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MI81.461.05464434537394899.830.161790.161230.18906RANDOM22.405
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.550.55-1.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.34
r_dihedral_angle_4_deg24.053
r_dihedral_angle_3_deg12.113
r_dihedral_angle_1_deg6.077
r_scangle_it4.142
r_scbond_it2.647
r_mcangle_it2.163
r_angle_refined_deg1.288
r_mcbond_it1.276
r_rigid_bond_restr1.265
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.34
r_dihedral_angle_4_deg24.053
r_dihedral_angle_3_deg12.113
r_dihedral_angle_1_deg6.077
r_scangle_it4.142
r_scbond_it2.647
r_mcangle_it2.163
r_angle_refined_deg1.288
r_mcbond_it1.276
r_rigid_bond_restr1.265
r_chiral_restr0.092
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1094
Nucleic Acid Atoms
Solvent Atoms278
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
PHASESphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
ADSCdata collection