X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82985% 2-propanol, 25% glycerol, 1.2M ammonium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.8456.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.413α = 90
b = 91.413β = 90
c = 162.518γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX225HE2012-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.97931APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.140.699.90.06622.47.6229172291711
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.271000.8132.97.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1FXX3.140.612291722917124399.790.226550.22490.25665RANDOM108.916
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
39.6239.62-79.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.231
r_dihedral_angle_4_deg12.487
r_dihedral_angle_3_deg12.159
r_dihedral_angle_1_deg4.116
r_angle_other_deg0.768
r_angle_refined_deg0.714
r_chiral_restr0.044
r_bond_refined_d0.004
r_bond_other_d0.002
r_gen_planes_refined0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.231
r_dihedral_angle_4_deg12.487
r_dihedral_angle_3_deg12.159
r_dihedral_angle_1_deg4.116
r_angle_other_deg0.768
r_angle_refined_deg0.714
r_chiral_restr0.044
r_bond_refined_d0.004
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7098
Nucleic Acid Atoms611
Solvent Atoms
Heterogen Atoms40

Software

Software
Software NamePurpose
XDSdata scaling
AMoREphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling