X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP827849% MPD, 100mM Tris, 0.1mM ATP, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
4.2971.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.73α = 90
b = 132.73β = 90
c = 336.89γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDADSC QUANTUM 315r2009-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97925ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.648.5299.60.0910.09183170

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.748.5228317081664139699.550.191030.19050.21768RANDOM42.906
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.41-1.412.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.849
r_dihedral_angle_4_deg18.266
r_dihedral_angle_3_deg15.251
r_dihedral_angle_1_deg5.854
r_scangle_it2.241
r_scbond_it1.395
r_angle_refined_deg1.172
r_angle_other_deg0.861
r_mcangle_it0.763
r_mcbond_it0.369
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.849
r_dihedral_angle_4_deg18.266
r_dihedral_angle_3_deg15.251
r_dihedral_angle_1_deg5.854
r_scangle_it2.241
r_scbond_it1.395
r_angle_refined_deg1.172
r_angle_other_deg0.861
r_mcangle_it0.763
r_mcbond_it0.369
r_chiral_restr0.068
r_mcbond_other0.054
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11980
Nucleic Acid Atoms
Solvent Atoms366
Heterogen Atoms201

Software

Software
Software NamePurpose
ADSCdata collection
SHELXSphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling