3PVW

Bovine GRK2 in complex with Gbetagamma subunits and a selective kinase inhibitor (CMPD103A)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.252777% PEG3350, 250 mM NaCl, 100 mM MES pH 6.25, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.160.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 187.564α = 90
b = 74.227β = 115.65
c = 123.346γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray150CCDMARMOSAIC 300 mm CCD2009-08-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G0.97856APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.493094.20.07220.453.850352-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.591003.85303

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OMW2.493047727255093.740.23930.23680.2849RANDOM79.0688
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.91-5.44.6-5.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.929
r_dihedral_angle_4_deg18.52
r_dihedral_angle_3_deg16.316
r_dihedral_angle_1_deg6.339
r_scangle_it1.487
r_angle_refined_deg1.141
r_scbond_it0.913
r_angle_other_deg0.807
r_mcangle_it0.653
r_mcbond_it0.341
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.929
r_dihedral_angle_4_deg18.52
r_dihedral_angle_3_deg16.316
r_dihedral_angle_1_deg6.339
r_scangle_it1.487
r_angle_refined_deg1.141
r_scbond_it0.913
r_angle_other_deg0.807
r_mcangle_it0.653
r_mcbond_it0.341
r_chiral_restr0.063
r_mcbond_other0.051
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8108
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms34

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing