X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293Tacsimate 35%, Phenol 10mM, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.935.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.387α = 90
b = 64.683β = 90
c = 81.592γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-225beryllium lenses2010-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.979APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.165097.80.0940.09423.89.12115862115862-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.161.1884.50.610.611.95.74962

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.1650109812109812579797.770.14480.14480.143570.16775RANDOM8.231
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.24-0.250.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.697
r_dihedral_angle_4_deg13.788
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg6.053
r_scangle_it4.236
r_scbond_it2.926
r_angle_other_deg2.334
r_mcangle_it1.932
r_mcbond_other1.543
r_angle_refined_deg1.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.697
r_dihedral_angle_4_deg13.788
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg6.053
r_scangle_it4.236
r_scbond_it2.926
r_angle_other_deg2.334
r_mcangle_it1.932
r_mcbond_other1.543
r_angle_refined_deg1.5
r_rigid_bond_restr1.373
r_mcbond_it1.297
r_chiral_restr0.091
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2927
Nucleic Acid Atoms
Solvent Atoms579
Heterogen Atoms3

Software

Software
Software NamePurpose
MD2data collection
HKL-3000phasing
DMmodel building
SHELXDphasing
SHELXEmodel building
ARP/wARPmodel building
CCP4model building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
DMphasing
CCP4phasing