3OJ6

Crystal structure of Blasticidin S Deaminase from Coccidioides Immitis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.4290EBS JCSG+ SCREEN A9: 200MM AMMOINUM CHLORIDE, 20% PEG 3350; COIMA.00173.A.A1 PS00476 AT 69MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, pH 7.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.48α = 90
b = 56.28β = 95.09
c = 90.29γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+RIGAKU VariMax HF2010-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75099.30.04331.968.85128850904-322.35
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7490.60.2893.32.33779

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1wn51.746.35128850841258799.20.1530.1510.189RANDOM12.44
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.60.240.630.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.247
r_dihedral_angle_4_deg23.062
r_dihedral_angle_3_deg11.489
r_dihedral_angle_1_deg6.1
r_scangle_it3.296
r_scbond_it2.057
r_angle_refined_deg1.428
r_mcangle_it1.293
r_angle_other_deg0.948
r_mcbond_it0.794
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.247
r_dihedral_angle_4_deg23.062
r_dihedral_angle_3_deg11.489
r_dihedral_angle_1_deg6.1
r_scangle_it3.296
r_scbond_it2.057
r_angle_refined_deg1.428
r_mcangle_it1.293
r_angle_other_deg0.948
r_mcbond_it0.794
r_mcbond_other0.243
r_chiral_restr0.087
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3798
Nucleic Acid Atoms
Solvent Atoms415
Heterogen Atoms25

Software

Software
Software NamePurpose
StructureStudiodata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling