3O0W

Structural basis of carbohydrate recognition by calreticulin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829525.5% (w/v) PEG 2000 MME, 0.15 M KSCN, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.9938.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.727α = 90
b = 43.769β = 90
c = 133.34γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102010-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.9779CHESSA1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9541.5996.5179851735511
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.951.9880.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.9541.591179851735595196.290.20.199280.196570.25055RANDOM22.709
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.050.71-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.3
r_dihedral_angle_4_deg17.318
r_dihedral_angle_3_deg14.79
r_dihedral_angle_1_deg6.748
r_scangle_it2.396
r_scbond_it1.55
r_angle_refined_deg1.275
r_mcangle_it1.011
r_mcbond_it0.8
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.3
r_dihedral_angle_4_deg17.318
r_dihedral_angle_3_deg14.79
r_dihedral_angle_1_deg6.748
r_scangle_it2.396
r_scbond_it1.55
r_angle_refined_deg1.275
r_mcangle_it1.011
r_mcbond_it0.8
r_nbtor_refined0.306
r_nbd_refined0.192
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.127
r_symmetry_hbond_refined0.089
r_chiral_restr0.087
r_metal_ion_refined0.049
r_bond_refined_d0.009
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1994
Nucleic Acid Atoms
Solvent Atoms177
Heterogen Atoms46

Software

Software
Software NamePurpose
ADSCdata collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling