3MWX

Crystal structure of a putative galactose mutarotase (BSU18360) from BACILLUS SUBTILIS at 1.45 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.862770.1700M ammonium acetate, 22.3000% polyethylene glycol 4000, 15.0000% Glycerol, 0.1M citric acid pH 5.86, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7354.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.686α = 90
b = 119.093β = 90
c = 144.689γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2010-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL14-1SSRLBL14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4529.773970.07811.02143533-312.028
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.451.594.50.7471.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.4529.773143450718397.840.1490.1480.167RANDOM15.746
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.250.97-0.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.65
r_dihedral_angle_4_deg19.428
r_dihedral_angle_3_deg11.082
r_dihedral_angle_1_deg6.769
r_scangle_it6.137
r_scbond_it3.968
r_mcangle_it2.578
r_angle_refined_deg1.548
r_mcbond_it1.526
r_angle_other_deg0.893
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.65
r_dihedral_angle_4_deg19.428
r_dihedral_angle_3_deg11.082
r_dihedral_angle_1_deg6.769
r_scangle_it6.137
r_scbond_it3.968
r_mcangle_it2.578
r_angle_refined_deg1.548
r_mcbond_it1.526
r_angle_other_deg0.893
r_mcbond_other0.441
r_chiral_restr0.092
r_bond_refined_d0.014
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5200
Nucleic Acid Atoms
Solvent Atoms713
Heterogen Atoms120

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDphasing
autoSHARPphasing