3MK0

Refinement of placental alkaline phosphatase complexed with nitrophenyl


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5752.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.022α = 90
b = 113.894β = 90
c = 106.594γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.970.19354791902870.1370.1350.19RANDOM21.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.051.04-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.446
r_dihedral_angle_4_deg15.126
r_dihedral_angle_3_deg13.663
r_dihedral_angle_1_deg5.949
r_scangle_it3.449
r_scbond_it2.266
r_mcangle_it1.349
r_angle_refined_deg1.247
r_mcbond_it0.876
r_nbtor_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.446
r_dihedral_angle_4_deg15.126
r_dihedral_angle_3_deg13.663
r_dihedral_angle_1_deg5.949
r_scangle_it3.449
r_scbond_it2.266
r_mcangle_it1.349
r_angle_refined_deg1.247
r_mcbond_it0.876
r_nbtor_refined0.305
r_nbd_refined0.208
r_symmetry_vdw_refined0.196
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.157
r_chiral_restr0.083
r_metal_ion_refined0.083
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3691
Nucleic Acid Atoms
Solvent Atoms527
Heterogen Atoms89

Software

Software
Software NamePurpose
REFMACrefinement