X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529322.0000% polyethylene glycol 6000, 1.0000M lithium chloride, 0.1M TRIS pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.7254.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.951α = 90
b = 55.33β = 105.4
c = 120.613γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2009-07-07MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.91837,0.97925,0.97876SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4129.76198.10.070.0710.82.93219053.817
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.412.4783.60.5980.5981.62.21995

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.4129.76132190162897.550.1910.1890.225RANDOM49.559
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.71-0.251.330.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.018
r_dihedral_angle_4_deg18.239
r_dihedral_angle_3_deg15.598
r_dihedral_angle_1_deg7.233
r_scangle_it4.028
r_scbond_it2.961
r_mcangle_it2.181
r_angle_refined_deg1.513
r_mcbond_it1.411
r_angle_other_deg0.903
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.018
r_dihedral_angle_4_deg18.239
r_dihedral_angle_3_deg15.598
r_dihedral_angle_1_deg7.233
r_scangle_it4.028
r_scbond_it2.961
r_mcangle_it2.181
r_angle_refined_deg1.513
r_mcbond_it1.411
r_angle_other_deg0.903
r_mcbond_other0.305
r_symmetry_vdw_other0.264
r_symmetry_vdw_refined0.236
r_symmetry_hbond_refined0.209
r_nbd_other0.204
r_nbd_refined0.201
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.137
r_chiral_restr0.087
r_nbtor_other0.085
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5303
Nucleic Acid Atoms
Solvent Atoms139
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SOLVEphasing
MolProbitymodel building
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction