X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72930.1 M HEPES pH=7.0, 5% tacsimate pH=7.0, 10% PEG 5K MME, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.9157.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.968α = 90
b = 40.218β = 104.33
c = 121.001γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRROR2008-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9793APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15501000.0950.09518.1844.55914959149-332.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.1999.80.5350.5352.63.92907

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.15505876658766296599.80.1760.1760.1740.213RANDOM15.04
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.70.961.44-1.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.157
r_dihedral_angle_4_deg19.88
r_dihedral_angle_3_deg13.712
r_dihedral_angle_1_deg6.986
r_scangle_it3.37
r_scbond_it2.17
r_angle_refined_deg1.514
r_mcangle_it1.252
r_angle_other_deg0.87
r_mcbond_it0.695
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.157
r_dihedral_angle_4_deg19.88
r_dihedral_angle_3_deg13.712
r_dihedral_angle_1_deg6.986
r_scangle_it3.37
r_scbond_it2.17
r_angle_refined_deg1.514
r_mcangle_it1.252
r_angle_other_deg0.87
r_mcbond_it0.695
r_mcbond_other0.203
r_chiral_restr0.094
r_bond_refined_d0.016
r_bond_other_d0.007
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5077
Nucleic Acid Atoms
Solvent Atoms613
Heterogen Atoms41

Software

Software
Software NamePurpose
HKL-2000data collection
HKL-3000phasing
MLPHAREphasing
DMmodel building
SHELXDphasing
RESOLVEmodel building
REFMACrefinement
HKL-2000data reduction
HKL-3000data scaling
DMphasing
RESOLVEphasing