X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1629116% PEG3350, 0.2M potassium chloride, 1:100 (w/w) Dispase., pH 6.0, vapor diffusion, hanging drop, temperature 291K
25.829115% PEG3350, 0.2M potassium chloride, 1:100 (w/w) Dispase., pH 5.8, vapor diffusion, hanging drop, temperature 291K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.086α = 90
b = 64.571β = 90
c = 290.255γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARCCD 3002009-05-18MSINGLE WAVELENGTH
21x-ray100CCDMARCCD 3002009-05-172009-05-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.92015CLSI08ID-1
2SYNCHROTRONCLSI BEAMLINE 08ID-10.97959CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.33088.40.05331.8933.538070
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.3849.80.2332

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSAD2.32038070119192.30.2450.2440.274THIN SHELLS (SFTOOLS)43.62
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3371.886-2.224
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.129
r_dihedral_angle_4_deg16.103
r_dihedral_angle_3_deg14.336
r_dihedral_angle_1_deg4.937
r_scangle_it2.255
r_scbond_it1.754
r_angle_refined_deg1.117
r_angle_other_deg0.875
r_mcangle_it0.706
r_mcbond_it0.361
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.129
r_dihedral_angle_4_deg16.103
r_dihedral_angle_3_deg14.336
r_dihedral_angle_1_deg4.937
r_scangle_it2.255
r_scbond_it1.754
r_angle_refined_deg1.117
r_angle_other_deg0.875
r_mcangle_it0.706
r_mcbond_it0.361
r_mcbond_other0.101
r_chiral_restr0.062
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6428
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms32

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling