X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529130% PEG 3350, 0.2 M Ammonium sulfate, 0.1 M Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.6353.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.377α = 90
b = 81.377β = 90
c = 170.892γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm platemirrors2004-01-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.53099.91224812225

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5201104710957124699.920.2160.215820.208460.28502RANDOM42.431
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.43-1.22-2.433.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.072
r_dihedral_angle_4_deg20.385
r_dihedral_angle_3_deg18.659
r_dihedral_angle_1_deg5.856
r_scangle_it4.163
r_mcangle_it4.129
r_mcbond_it3.318
r_scbond_it2.883
r_angle_refined_deg1.315
r_angle_other_deg0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.072
r_dihedral_angle_4_deg20.385
r_dihedral_angle_3_deg18.659
r_dihedral_angle_1_deg5.856
r_scangle_it4.163
r_mcangle_it4.129
r_mcbond_it3.318
r_scbond_it2.883
r_angle_refined_deg1.315
r_angle_other_deg0.99
r_mcbond_other0.547
r_symmetry_hbond_refined0.3
r_symmetry_vdw_other0.248
r_nbd_refined0.204
r_nbd_other0.2
r_nbtor_refined0.185
r_symmetry_vdw_refined0.159
r_xyhbond_nbd_refined0.133
r_chiral_restr0.11
r_nbtor_other0.088
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_gen_planes_other0.007
r_bond_other_d0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2064
Nucleic Acid Atoms
Solvent Atoms48
Heterogen Atoms52

Software

Software
Software NamePurpose
HKL-2000data collection
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling