3GEL

O-Methylphosphorylated Torpedo Acetylcholinesterase Obtained by Reaction with Methyl Paraoxon (AGED)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.8277.1518% Peg 200, 0.1 M MES, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties
Matthews coefficientSolvent content
4.0969.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.726α = 90
b = 111.726β = 90
c = 136.853γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 6000Multilayer Mirrors2008-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEOTHER1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3928.5394.640.13923.7521.27356083326.949
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.392.481006.3620.674106

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2ACE2.3927.9335608187294.640.211690.210210.23995RANDOM26.949
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.410.210.41-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.25
r_dihedral_angle_4_deg21.102
r_dihedral_angle_3_deg16.053
r_dihedral_angle_1_deg6.35
r_scangle_it3.53
r_scbond_it2.705
r_mcangle_it2.611
r_angle_refined_deg1.914
r_mcbond_it1.863
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.25
r_dihedral_angle_4_deg21.102
r_dihedral_angle_3_deg16.053
r_dihedral_angle_1_deg6.35
r_scangle_it3.53
r_scbond_it2.705
r_mcangle_it2.611
r_angle_refined_deg1.914
r_mcbond_it1.863
r_nbtor_refined0.314
r_symmetry_vdw_refined0.301
r_nbd_refined0.242
r_xyhbond_nbd_refined0.189
r_chiral_restr0.126
r_symmetry_hbond_refined0.115
r_bond_refined_d0.024
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4208
Nucleic Acid Atoms
Solvent Atoms351
Heterogen Atoms

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
AMoREphasing
REFMACrefinement
SAINTdata reduction
SCALAdata scaling