X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.929350 mM Na Citrate pH 4.9, 24% PEG 4000, 7.5% glycerol, soaking liquor containing 30% glycerol, 0.5mM inhibitor, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2645.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.915α = 90
b = 106.169β = 90
c = 126.94γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.3ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25098.20.1324.25959323.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.2889.80.4572.12.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB ENTRY 2GIQ2.248.97595935564129390.1920.190.238RANDOM17.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.021.15-1.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.82
r_dihedral_angle_3_deg15.979
r_dihedral_angle_4_deg14.966
r_dihedral_angle_1_deg6.128
r_scangle_it2.743
r_scbond_it1.813
r_angle_refined_deg1.396
r_mcangle_it1.265
r_angle_other_deg0.955
r_mcbond_it0.802
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.82
r_dihedral_angle_3_deg15.979
r_dihedral_angle_4_deg14.966
r_dihedral_angle_1_deg6.128
r_scangle_it2.743
r_scbond_it1.813
r_angle_refined_deg1.396
r_mcangle_it1.265
r_angle_other_deg0.955
r_mcbond_it0.802
r_symmetry_vdw_other0.213
r_nbd_refined0.2
r_nbd_other0.192
r_symmetry_vdw_refined0.192
r_symmetry_hbond_refined0.176
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.167
r_mcbond_other0.148
r_nbtor_other0.086
r_chiral_restr0.077
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8796
Nucleic Acid Atoms
Solvent Atoms514
Heterogen Atoms78

Software

Software
Software NamePurpose
Blu-Icedata collection
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling