X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52771.6 M Ammonium sulfate, 10% Dioxane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2846.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 217.493α = 90
b = 40.58β = 107.5
c = 135.98γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Mirrors2008-12-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9794APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
124099.80.06321.233.677704775492
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0398.60.5462.33.23832

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT24027745573563389299.610.1820.181840.179910.22514RANDOM16.127
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.41-0.683.38-2.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.198
r_dihedral_angle_4_deg18.145
r_dihedral_angle_3_deg14.549
r_dihedral_angle_1_deg12.394
r_scangle_it3.97
r_scbond_it2.685
r_angle_refined_deg1.716
r_mcangle_it1.631
r_angle_other_deg0.959
r_mcbond_it0.956
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.198
r_dihedral_angle_4_deg18.145
r_dihedral_angle_3_deg14.549
r_dihedral_angle_1_deg12.394
r_scangle_it3.97
r_scbond_it2.685
r_angle_refined_deg1.716
r_mcangle_it1.631
r_angle_other_deg0.959
r_mcbond_it0.956
r_mcbond_other0.282
r_chiral_restr0.111
r_bond_refined_d0.02
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8609
Nucleic Acid Atoms
Solvent Atoms492
Heterogen Atoms77

Software

Software
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
SHELXDphasing
Cootmodel building
MLPHAREphasing
CCP4model building
PHENIXmodel building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
CCP4phasing
PHENIXphasing