3FOV

Crystal structure of protein RPA0323 of unknown function from Rhodopseudomonas palustris


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.429420% PEG 3350, 0.2 M Magnesium nitrate, 0.3 M NSDB-256, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.831.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.341α = 90
b = 44.747β = 108.62
c = 32.661γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.9792APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8826.399.50.06740.09910.48519851936.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.881.941000.4456.210.5492

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8826.278456845640798.430.190.190.1880.222RANDOM23.636
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1-0.280.4-0.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.327
r_dihedral_angle_3_deg17.176
r_dihedral_angle_4_deg16.598
r_dihedral_angle_1_deg6.518
r_scangle_it4.373
r_scbond_it2.614
r_mcangle_it1.706
r_angle_refined_deg1.488
r_mcbond_it0.922
r_angle_other_deg0.914
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.327
r_dihedral_angle_3_deg17.176
r_dihedral_angle_4_deg16.598
r_dihedral_angle_1_deg6.518
r_scangle_it4.373
r_scbond_it2.614
r_mcangle_it1.706
r_angle_refined_deg1.488
r_mcbond_it0.922
r_angle_other_deg0.914
r_mcbond_other0.216
r_chiral_restr0.091
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms798
Nucleic Acid Atoms
Solvent Atoms88
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
SHELXDphasing
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
HKL-3000phasing