3EIX

Crystal structure of selenomethionine labelled Staphylococcus aureus lipoprotein, HtsA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72950.1 Hepes pH 7.0, Jeffamine ED-2001, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.1943.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.952α = 90
b = 43.645β = 100.57
c = 76.04γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Vertical focusing mirror; single crystal (Si111) bent monochromator (horizontal focusing)2008-02-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-10.97607SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.355097.90.0537.9243.462441
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.487.30.1662.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.355059259315697.750.131220.12940.16579RANDOM9.468
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.380.07-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.077
r_dihedral_angle_4_deg15.464
r_dihedral_angle_3_deg11.176
r_sphericity_free7.005
r_dihedral_angle_1_deg5.576
r_scangle_it4.248
r_sphericity_bonded3.77
r_scbond_it3.24
r_mcangle_it1.959
r_rigid_bond_restr1.883
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.077
r_dihedral_angle_4_deg15.464
r_dihedral_angle_3_deg11.176
r_sphericity_free7.005
r_dihedral_angle_1_deg5.576
r_scangle_it4.248
r_sphericity_bonded3.77
r_scbond_it3.24
r_mcangle_it1.959
r_rigid_bond_restr1.883
r_mcbond_it1.649
r_angle_refined_deg1.402
r_angle_other_deg0.935
r_mcbond_other0.616
r_symmetry_vdw_other0.265
r_nbd_refined0.232
r_symmetry_hbond_refined0.206
r_nbd_other0.186
r_nbtor_refined0.17
r_symmetry_vdw_refined0.163
r_xyhbond_nbd_refined0.159
r_chiral_restr0.088
r_nbtor_other0.083
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2298
Nucleic Acid Atoms
Solvent Atoms494
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling