3DG4

Coordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complex


ELECTRON MICROSCOPY
Sample
E. coli 70S ribosome bound with RF1
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentHOMEMADE PLUNGER
Cryogen NameETHANE
Sample Vitrification DetailsRapid freezing in liquid ethane
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles24622
Reported Resolution (Å)12.8
Resolution Method
Other DetailsSPIDER package
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (2AVY, 2AW4)
Refinement SpaceREAL
Refinement ProtocolRIGID BODY FIT
Refinement Targetcross-correlation coefficient, real-space R factor
Overall B Value
Fitting Procedure
DetailsMETHOD--Auto REFINEMENT PROTOCOL--multi-rigid body, real-space refinement
Data Acquisition
Detector TypeKODAK SO-163 FILM
Electron Dose (electrons/Å**2)20
Imaging Experiment1
Date of Experiment2002-12-01
Temperature (Kelvin)93
Microscope ModelFEI TECNAI F20
Minimum Defocus (nm)2000
Maximum Defocus (nm)4000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification50000
Calibrated Magnification49696
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)200
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL FITTINGRSRef
RECONSTRUCTIONSPIDER
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
CTF correction of 3D map