3CJB

Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with Gelsolin-segment 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729810% Peg MME 5000, 5% Tacsimate, 0.1 M Hepes, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.261.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.696α = 90
b = 69.54β = 90
c = 182.106γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-04-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.000ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.212077.50.2363.62.7957339.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.3150.20.4181.3620

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.2190.91955446477.370.2460.2450.269RANDOM40.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.72-4.590.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.696
r_dihedral_angle_4_deg14.692
r_dihedral_angle_3_deg12.22
r_dihedral_angle_1_deg2.889
r_mcbond_other2.524
r_angle_other_deg2.196
r_mcangle_it1.279
r_angle_refined_deg1.014
r_mcbond_it0.742
r_scangle_it0.602
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.696
r_dihedral_angle_4_deg14.692
r_dihedral_angle_3_deg12.22
r_dihedral_angle_1_deg2.889
r_mcbond_other2.524
r_angle_other_deg2.196
r_mcangle_it1.279
r_angle_refined_deg1.014
r_mcbond_it0.742
r_scangle_it0.602
r_scbond_it0.346
r_chiral_restr0.056
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3818
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms33

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
BOSdata collection