X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18293(NH4)SO4, MPD, L-Cystein, NaCl, Tris, pH 8.0, vapor diffusion, temperature 293K, pH 8.00
Crystal Properties
Matthews coefficientSolvent content
4.2971.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.663α = 90
b = 96.663β = 90
c = 217.511γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.2ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.683.6299.60.06411.26.6367762
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6998.30.7334.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.683.623692434839183199.40.2250.2230.254RANDOM20.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7-0.35-0.71.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.592
r_dihedral_angle_3_deg22.967
r_dihedral_angle_4_deg21.173
r_dihedral_angle_1_deg6.974
r_scangle_it3.119
r_scbond_it1.975
r_angle_refined_deg1.834
r_angle_other_deg1.189
r_mcangle_it1.139
r_mcbond_it0.947
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.592
r_dihedral_angle_3_deg22.967
r_dihedral_angle_4_deg21.173
r_dihedral_angle_1_deg6.974
r_scangle_it3.119
r_scbond_it1.975
r_angle_refined_deg1.834
r_angle_other_deg1.189
r_mcangle_it1.139
r_mcbond_it0.947
r_symmetry_vdw_other0.303
r_symmetry_hbond_refined0.242
r_nbd_refined0.235
r_chiral_restr0.211
r_nbd_other0.203
r_symmetry_vdw_refined0.193
r_nbtor_refined0.19
r_mcbond_other0.149
r_xyhbond_nbd_refined0.148
r_nbtor_other0.098
r_bond_refined_d0.018
r_xyhbond_nbd_other0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3445
Nucleic Acid Atoms
Solvent Atoms36
Heterogen Atoms61

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing