3BZ3

Crystal Structure Analysis of Focal Adhesion Kinase with a Methanesulfonamide Diaminopyrimidine Inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.529815% PEG 8000, 0.1M HEPES, 0.2M (NH4)2SO4, pH 7.5, vapor diffusion, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1442.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.46α = 90
b = 47.825β = 98.43
c = 63.067γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS HTC2004-11-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ DW1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.250910.0739.93.312589
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.2859.10.2082816

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.232.761256968291.170.160.1560.234RANDOM29.821
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.731.67-0.70.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.869
r_dihedral_angle_4_deg18.658
r_dihedral_angle_3_deg14.955
r_dihedral_angle_1_deg6.871
r_scangle_it3.49
r_scbond_it2.298
r_mcangle_it1.387
r_mcbond_it1.205
r_angle_refined_deg0.794
r_angle_other_deg0.628
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.869
r_dihedral_angle_4_deg18.658
r_dihedral_angle_3_deg14.955
r_dihedral_angle_1_deg6.871
r_scangle_it3.49
r_scbond_it2.298
r_mcangle_it1.387
r_mcbond_it1.205
r_angle_refined_deg0.794
r_angle_other_deg0.628
r_symmetry_vdw_other0.265
r_symmetry_hbond_refined0.263
r_nbd_other0.224
r_nbd_refined0.219
r_nbtor_refined0.189
r_mcbond_other0.186
r_xyhbond_nbd_refined0.184
r_symmetry_vdw_refined0.126
r_nbtor_other0.089
r_chiral_restr0.051
r_gen_planes_refined0.008
r_bond_refined_d0.006
r_gen_planes_other0.005
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2095
Nucleic Acid Atoms
Solvent Atoms281
Heterogen Atoms35

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction