X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62770.5M ammonium sulfate, 0.1M triSodium Citrate dihydrate pH 5.60, 1.0M Lithium Sulfate monohydrate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
4.2270.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.481α = 90
b = 126.481β = 90
c = 169.926γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102007-06-29MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 2102007-06-29MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0000Photon FactoryAR-NW12A
2SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A0.9792Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.85099.40.10611.77.334141
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.82.91000.5867.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.839.634141173198.80.2450.2430.294RANDOM46.63
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.430.43-0.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.687
r_dihedral_angle_3_deg21.055
r_dihedral_angle_4_deg19.8
r_dihedral_angle_1_deg6.78
r_scangle_it1.676
r_angle_refined_deg1.46
r_scbond_it1.011
r_mcangle_it0.667
r_mcbond_it0.382
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.687
r_dihedral_angle_3_deg21.055
r_dihedral_angle_4_deg19.8
r_dihedral_angle_1_deg6.78
r_scangle_it1.676
r_angle_refined_deg1.46
r_scbond_it1.011
r_mcangle_it0.667
r_mcbond_it0.382
r_nbtor_refined0.308
r_nbd_refined0.246
r_symmetry_vdw_refined0.233
r_xyhbond_nbd_refined0.205
r_symmetry_hbond_refined0.171
r_chiral_restr0.107
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5527
Nucleic Acid Atoms
Solvent Atoms30
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing