X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.814% PEG 8000, 1 M NACL, 25 MM HEPES, PH 7.8
Crystal Properties
Matthews coefficientSolvent content
2.5551

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.489α = 90
b = 84.178β = 92.05
c = 121.773γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BMAPS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43083.90.068.32.7676682
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.372.4967.20.351.642.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LP92.412159694314284.80.2430.240.29RANDOM36.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.590.280.86-1.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.832
r_dihedral_angle_4_deg14.417
r_dihedral_angle_3_deg13.284
r_dihedral_angle_1_deg5.117
r_angle_refined_deg1.04
r_scangle_it0.79
r_scbond_it0.535
r_mcangle_it0.377
r_mcbond_it0.301
r_nbtor_refined0.292
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.832
r_dihedral_angle_4_deg14.417
r_dihedral_angle_3_deg13.284
r_dihedral_angle_1_deg5.117
r_angle_refined_deg1.04
r_scangle_it0.79
r_scbond_it0.535
r_mcangle_it0.377
r_mcbond_it0.301
r_nbtor_refined0.292
r_symmetry_vdw_refined0.277
r_symmetry_hbond_refined0.192
r_nbd_refined0.161
r_xyhbond_nbd_refined0.109
r_chiral_restr0.058
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13140
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing