2UV7

Crystal Structure of a CBS domain pair from the regulatory gamma1 subunit of human AMPK in complex with AMP


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.8633.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.995α = 90
b = 43.836β = 118.79
c = 55.734γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU IMAGE PLATE2005-09-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1248.899.80.063.619530

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT234.94902648399.80.1620.1580.23RANDOM17.28
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.62-0.190.54-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.778
r_dihedral_angle_4_deg24.72
r_dihedral_angle_3_deg14.92
r_dihedral_angle_1_deg5.6
r_angle_refined_deg1.344
r_angle_other_deg0.998
r_xyhbond_nbd_refined0.33
r_symmetry_hbond_refined0.282
r_nbd_refined0.219
r_symmetry_vdw_refined0.213
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.778
r_dihedral_angle_4_deg24.72
r_dihedral_angle_3_deg14.92
r_dihedral_angle_1_deg5.6
r_angle_refined_deg1.344
r_angle_other_deg0.998
r_xyhbond_nbd_refined0.33
r_symmetry_hbond_refined0.282
r_nbd_refined0.219
r_symmetry_vdw_refined0.213
r_nbd_other0.192
r_symmetry_vdw_other0.178
r_nbtor_refined0.17
r_scangle_it0.148
r_scbond_it0.117
r_mcangle_it0.113
r_mcbond_it0.089
r_nbtor_other0.083
r_chiral_restr0.072
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1132
Nucleic Acid Atoms
Solvent Atoms201
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling