2ROC
Solution structure of Mcl-1 Complexed with Puma
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.5mM [U-100% 13C; U-100% 15N] Mcl-1; 0.5mM Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 0.5mM [U-100% 13C; U-100% 15N] Mcl-1; 0.5mM Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 | |
3 | 3D HNHA | 0.5mM [U-100% 13C; U-100% 15N] Mcl-1; 0.5mM Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 0.5mM Mcl-1; 0.5mM [U-100% 13C; U-100% 15N] Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 | |
5 | 3D 1H-13C NOESY | 0.5mM Mcl-1; 0.5mM [U-100% 13C; U-100% 15N] Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 | |
6 | 3D HNHA | 0.5mM Mcl-1; 0.5mM [U-100% 13C; U-100% 15N] Puma; 95% H2O/5% D2O | 95% H2O/5% D2O | 120 mM | 6.7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | DRX | 600 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | Structures were calculated on the basis of 3667 total constraints. 2943 of these constraints were NOE-derived distances of which 197 were intermolecular NOEs; 348 dihedral angle restraints and 188 hydrogen bonds | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 256 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | standard heteronuclear methods were used to assign resonances and determine the constraints |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 1.3 | Bruker Biospin |
2 | data analysis | XEASY | 1.3 | Bartels et al. |
3 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |