X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52771.6 M (NH4)2SO4, 0.1 M HEPES, 0.1 M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6553.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.174α = 90
b = 222.589β = 90
c = 133.719γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMirrors2006-02-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.00000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.633.9894.70.1290.1299.343.65203152031-339
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6876.40.6460.6461.722.73616

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1J6Z2.60633.98509204837125481000.213830.213830.209910.28812RANDOM38.128
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.95-2.01-3.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.387
r_dihedral_angle_3_deg17.186
r_dihedral_angle_4_deg16.196
r_dihedral_angle_1_deg5.333
r_scangle_it1.701
r_angle_refined_deg1.389
r_scbond_it1.07
r_mcangle_it0.553
r_mcbond_it0.328
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.387
r_dihedral_angle_3_deg17.186
r_dihedral_angle_4_deg16.196
r_dihedral_angle_1_deg5.333
r_scangle_it1.701
r_angle_refined_deg1.389
r_scbond_it1.07
r_mcangle_it0.553
r_mcbond_it0.328
r_nbtor_refined0.307
r_symmetry_vdw_refined0.218
r_nbd_refined0.207
r_symmetry_hbond_refined0.191
r_xyhbond_nbd_refined0.17
r_metal_ion_refined0.133
r_chiral_restr0.088
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11024
Nucleic Acid Atoms
Solvent Atoms502
Heterogen Atoms153

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing