2O64

Crystal structure of Pim1 with Quercetagetin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5277NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.362.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 97.755α = 90
b = 97.755β = 90
c = 80.97γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.10000ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4484.5199.970.087861559915599
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.442.5041000.562.34.21227

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.4484.51155991559984199.970.191140.191140.189130.22957RANDOM27.272
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.621.813.62-5.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg3.19
r_scangle_it2.96
r_scbond_it1.707
r_angle_refined_deg1.497
r_mcangle_it1.303
r_angle_other_deg0.852
r_mcbond_it0.679
r_symmetry_vdw_other0.25
r_nbd_other0.233
r_nbd_refined0.201
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg3.19
r_scangle_it2.96
r_scbond_it1.707
r_angle_refined_deg1.497
r_mcangle_it1.303
r_angle_other_deg0.852
r_mcbond_it0.679
r_symmetry_vdw_other0.25
r_nbd_other0.233
r_nbd_refined0.201
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.133
r_chiral_restr0.092
r_nbtor_other0.084
r_symmetry_vdw_refined0.084
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2230
Nucleic Acid Atoms
Solvent Atoms73
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
MOSFLMdata reduction
CCP4data scaling
CCP4phasing