2O30

Nuclear movement protein from E. cuniculi GB-M1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529825% PEG3350, 0.2M CaCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.5621.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.98α = 90
b = 44.171β = 90.08
c = 67.721γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray150CCDSBC-22006-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9790156APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.665091.82003522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.661.7256.60.1191.85.81224

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.6667.732003418982103491.740.21480.216860.214760.25645RANDOM30.565
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.29-0.25-1.63-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.042
r_dihedral_angle_4_deg20.47
r_dihedral_angle_3_deg13.002
r_dihedral_angle_1_deg5.509
r_scangle_it4.195
r_scbond_it2.578
r_mcangle_it1.79
r_angle_refined_deg1.307
r_mcbond_it1.09
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.042
r_dihedral_angle_4_deg20.47
r_dihedral_angle_3_deg13.002
r_dihedral_angle_1_deg5.509
r_scangle_it4.195
r_scbond_it2.578
r_mcangle_it1.79
r_angle_refined_deg1.307
r_mcbond_it1.09
r_nbtor_refined0.309
r_nbd_refined0.227
r_symmetry_vdw_refined0.153
r_symmetry_hbond_refined0.135
r_xyhbond_nbd_refined0.132
r_chiral_restr0.095
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1324
Nucleic Acid Atoms
Solvent Atoms184
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXEmodel building
SOLVEphasing
RESOLVEphasing
ARP/wARPmodel building