2N8D
In silico designed antimicrobial peptide Lavracin
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 8.9 uM Lavracin | trifluoroethanol/water | 100 | 4.1 | ambient | 291 | |
| 2 | 2D DQF-COSY | 8.9 uM Lavracin | trifluoroethanol/water | 100 | 4.1 | ambient | 291 | |
| 3 | 2D 1H-1H NOESY | 8.9 uM Lavracin | trifluoroethanol/water | 100 | 4.1 | ambient | 291 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | 12 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |
| 2 | structure solution | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
| 3 | peak picking | ATNOSCANDID | Herrmann, Guntert and Wuthrich | |
| 4 | chemical shift assignment | Sparky | Goddard | |
