2N7L

NMR structure of the N-domain of troponin C bound to the switch region of troponin I and the covalent levosimendan analog i9


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5-0.8 mM [U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
22D 1H-13C HSQC0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
33D HNCACB0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
43D CBCA(CO)NH0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
53D HNHA0.5-0.8 mM [U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
63D H(CCO)NH0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
73D C(CO)NH0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
83D 1H-15N NOESY0.5-0.8 mM [U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
93D 1H-13C NOESY aliphatic0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM [U-99% 2H] imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS100% D2O6.9ambient303
10gnoesyChsqc_CNfilt0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS95% H2O/5% D2O6.9ambient303
112D 1H-1H NOESY CN filtered0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM [U-99% 2H] imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS100% D2O6.9ambient303
122D 1H-1H TOCSY0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM [U-99% 2H] imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS100% D2O6.9ambient303
132D 1H-19F HMQC0.5-0.8 mM [U-13C; U-15N] protein_1, 100 mM potassium chloride, 10 mM [U-99% 2H] imidazole, 2 mM calcium chloride, 0.25 mM [U-99% 2H] DSS100% D2O6.9ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA800
NMR Refinement
MethodDetailsSoftware
simulated annealingVnmrJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJVarian
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4data analysisNMRViewJohnson, One Moon Scientific
5prediction of phi and psi dihedral anglesTALOSCornilescu, Delaglio and Bax
6structure solutionX-PLOR NIH2.35Schwieters, Kuszewski, Tjandra and Clore
7refinementX-PLOR NIH2.35Schwieters, Kuszewski, Tjandra and Clore
8generation of topology and parameter files for non-standard aminoacid ci9PRODRGA. W. Sch ttelkopf and D. M. F. van Aalten