2N7D
Solution structure of the UBL domain of human Ddi2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
2 | 3D HNCACB | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
4 | 3D HCCH-TOCSY | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
5 | 3D 1H-13C NOESY | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
6 | 3D 1H-15N NOESY | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 | |
7 | 3D HNCO | 25 mM sodium phosphate, 100 mM sodium chloride | 95% H2O/5% D2O | 0.1 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 850 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, molecular dynamics | YASARA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 40 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | YASARA | YASARA | |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |