2N76

Solution NMR Structure of De novo designed protein LFR1 1 with ferredoxin fold, Northeast Structural Genomics Consortium (NESG) Target OR414


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
22D 1H-13C HSQC0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
33D HNCO0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
43D CBCA(CO)NH0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
53D HNCACB0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
63D 1H-13C arom NOESY0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
73D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY0.885 mM [U-100% 13C; U-100% 15N] OR414.005, 5 mM DTT, 100 mM NaCl, 10 mM Tris-HCl pH 7.5, 0.02 % NaN390% H2O/10% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamics, simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
2structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
3geometry optimizationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
5geometry optimizationCYANA3.0Guntert, Mumenthaler and Wuthrich
6structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
7data analysisAutoStructure2.1Huang, Tejero, Powers and Montelione
8refinementAutoStructure2.1Huang, Tejero, Powers and Montelione
9data analysisAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
10chemical shift assignmentAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
11processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
12data analysis,peak picking,chemical shift assignmentXEASYBartels et al.
13collectionTopSpinBruker Biospin
14collectionVnmrJVarian
15chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
16data analysisSparkyGoddard
17geometry optimizationTALOS+Shen, Cornilescu, Delaglio and Bax
18geometry optimizationPALESPALES (Zweckstetter, Bax)
19geometry optimizationREDCATValafar, Prestegard
20structure validationPSVSBhattacharya, Montelione