2N3F

Solution structure of both dsRBDs of DRB4 along with linker (viz. DRB4(1-153))


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC500 uM [U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
23D HNCO500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
33D HN(CA)CO500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
43D HNCA500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
53D HN(CO)CA500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
63D HNCACB500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
73D HN(COCA)CB500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
82D 1H-13C HSQC500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
93D H(CCO)NH-TOCSY500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
103D (H)C(CO)NH-TOCSY500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
113D HCCH-TOCSY500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
123D HNHA500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
132D 1H-13C HSQC500 uM [U-10% 13C] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
142D 1H-13C HSQC250 uM [U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
153D 1H-13C NOESY500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153)100% D2O0.157.2ambient298
162D 1H-15N HSQC500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153)100% D2O0.157.2ambient298
172D 1H-1H NOESY500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153)100% D2O0.157.2ambient298
182D 1H-15N HSQC250 uM [U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
192D 1H-15N HSQC500 uM [U-100% 13C; U-100% 15N] DRB4(1-153), filamentous virus, 18mg/mL90% H2O/10% D2O0.157.2ambient298
203D 1H-15N NOESY500 uM [U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
213D 1H-13C NOESY500 uM [U-100% 13C; U-100% 15N] DRB4(1-153)90% H2O/10% D2O0.157.2ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
NMR Refinement
MethodDetailsSoftware
simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPIN2.1.6Bruker Biospin
2processingTOPSPIN2.1.6Bruker Biospin
3chemical shift assignmentCARA1.8.4Keller and Wuthrich
4data analysisCARA1.8.4Keller and Wuthrich
5peak pickingCARA1.8.4Keller and Wuthrich
6data analysisSPARKYGoddard
7structure solutionSPARKYGoddard
8data analysisSPARKYSchwieters, Kuszewski, Tjandra and Clore
9structure solutionSPARKYSchwieters, Kuszewski, Tjandra and Clore
10data analysisSPARKYGoddard
11structure solutionSPARKYGoddard
12data analysisSPARKYSchwieters, Kuszewski, Tjandra and Clore
13structure solutionSPARKYSchwieters, Kuszewski, Tjandra and Clore
14structure validationProcheckNMR3.5.4Laskowski and MacArthur
15refinementX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore