2MX9

NMR structure of N-terminal domain from A. ventricosus minor ampullate spidroin (MiSp) at pH 5.5


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
23D CBCA(CO)NH0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
33D HNCO0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
43D HNCA0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
53D HN(CA)CO0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
63D 1H-15N NOESY0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
73D 1H-13C NOESY aromatic0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
83D 1H-13C NOESY aliphatic0.5 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-99% 2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
93D 13C,15N filtered 1H-13C NOESY aliphatic11.3 mg/mL [U-99% 13C; U-99% 15N] protein, 11.3 mg/mL protein, 20 mM sodium chloride, 0.03 % sodium azide, 20 mM [U-2H] sodium acetate, 0.01 tablet/100mL protease inhibitor cocktail92% H2O/8% D2O0.045.5ambient295
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAvance800
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsVNMRJ
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRJ2.1bVarian
2processingTOPSPIN3.1Bruker Biospin
3collectionTOPSPIN3.1Bruker Biospin
4chemical shift assignmentCARA1.9.0Keller and Wuthrich
5structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
6data analysisUNIO2.0.2T. Herrmann, F. Fiorito, J. Volk
7peak pickingUNIO2.0.2T. Herrmann, F. Fiorito, J. Volk
8refinementCNS1.21Brunger, Adams, Clore, Gros, Nilges and Read
9refinementCYANAGuntert, Mumenthaler and Wuthrich