2MNS
Solution NMR structure of the reovirus p15 fusion-associated small transmembrane (FAST) protein fusion-inducing lipid packing sensor (FLiPS) motif in dodecyl phosphocholine (DPC) micelles
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
2 | 2D 1H-1H TOCSY | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
3 | 2D 1H-15N HSQC | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 | ||
4 | 2D 1H-13C HSQC | 1 mM protein_1, 150 mM DPC, 0.5 mM DSS, 0.2 mM sodium azide, 20 mM [U-2H] sodium acetate | 90% H2O/10% D2O | 5 | ambient | 310 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | X-PLOR_NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 50 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR_NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
2 | processing | TOPSPIN | 3.1 | Bruker Biospin |
3 | chemical shift assignment | SPARKY | 3.110 | Goddard |
4 | validation | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
5 | structure viewing | UCSF_CHIMERA | 1.8 | NIH |
6 | ensemble viewing | Molmol | 2K.2 | Koradi, Billeter and Wuthrich |